Labs
General Lab Information, relevant to all labs
- Lab 1: BLASTing off
- Lab 2: BLASTing ahead: conditionals and user input
- Lab 3: Multiple Sequence Alignment; conditionals, functions, loops
- Programming in 10/8 class
- tajima.py code outline
- seqs.fasta sequence file
- Lab 4: Phylogeny and pass-through scripts
- Programming in 10/17 class
- findTMblank.py code outline
- tmcombined.fasta sequence file
- Lab 5: Gene expression and functional
analysis
- Lab 6: Gene Expression Analysis
- Lab 7: ensembl and biomart ...
- Lab 8: The Zoo Inside You
- metagenomics.html
- aggregateTableGenus.txt
- distMatrixGen.r
- otutable.txt
- Python script to convert PICRUSt output for LEfSe.
- GSE6575_series_matrix.txt
- Lab 9: Simulating the Incidentalome