Projects:
Project assignments will become available during the semester. A tentative guide to planned projects and dates is given here for planning purposes.
- Find-a-Gene:
- Find-A-Gene, Part a: Due September 24th
- Find-A-Gene, Part b: Due October 17th
- Gene Expression and annotation:
- Reliability of Metagenomics Sequence Reads:
- Due December 5th
- Download either the zip archive, or all of the following files, and either edit the skeleton code in project3.py, or write your own from scratch.
- project3.py (skeleton code)
- metagen.fastq: the big fastq file
- metagen.txt: the big classification file
- rand_10.fastq: a 10-element fastq file
- rand_100.fastq: a 100-element fastq file
- rand_1000.fastq: a 1000-element fastq file
- rand_10.txt: a 10-element classification file
- rand_100.txt: a 100-element classification file
- rand_1000.txt: a 1000-element classification file